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Calculation Operations

Page type: Reference · Generated from src/script/apiDocs · Verified 2026-07-13T00:00:00.000Z

Calculator-backed operations: each takes a structure (or an initial/final pair for path methods) plus a settings object whose calculator comes from tako.calculator.gfn2(...) or tako.calculator.mlip(...). Every operation returns a result object with convergence state; extract energies and structures with the tako.analysis.* accessors rather than reading raw fields.

Looking up one of these paths directly returns its complete generated contract — signature, theory, usage notes, the full settings table with defaults and validation, result fields, and error behavior.

OperationUse it forFull contract
tako.singlePointRuns a fixed-geometry calculation and returns properties for the exact input coordinates.Open settings
tako.optimizeRelaxes atomic positions, and optionally the periodic cell, through the normal Tako calculation workspace.Open settings
tako.molecularDynamicsRuns a newly initialized MD trajectory and returns stored frames plus a scalar trace. The public result has no velocities, pressure trace, effective-mode label, or restart state.Open settings
tako.phononRuns finite-displacement phonons for periodic structures.Open settings
tako.xrdComputes geometry-only periodic Bragg sticks or a finite Cartesian-pair Debye curve. The actual returned mode can silently differ from a periodic request when cell or PBC is absent.Open settings
tako.vibrationRuns molecular finite-difference vibrational analysis and optional IR/Raman spectra.Open settings
tako.stdaRuns sTDA vertical excitations with the selected GFN2-xTB or g-xTB ground-state route and folds the requested roots into a sampled energy-domain UV–visible curve.Open settings
tako.reactionPathRuns NEB/reaction-path calculations between an initial and final structure.Open settings
tako.transitionStateRuns a fixed combined CI-NEB, optional dimer, and optional vibration-count workflow. A resolved result requires stage-specific convergence checks and does not expose the band, barrier, full modes, or restart state.Open settings

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